Computes cell cycle phase scores for each cell (based on the mean expression of phase markers from Whitfield et al, 2002). Plots a labelled tSNE plot from a Seurat object, where the clusters are labelled directly on the plot
cellCyclePlot(seurat, species = "m_musculus", facets = TRUE, legend = FALSE, return_scores = FALSE)
| seurat | Seurat object. |
|---|---|
| species | m_musculus or h_sapiens. |
| facets | Boolean to indicate whether a facet should be used for each cluster., or if all the clusters should be plotted together. |
| legend | Boolean to indicate whether legend should be included. |
A ggplot2 object. A tSNE plot with the cell cycle plots