meanClusterExpression

Source: R/expression_correlation.R

This function computes the mean expression of each gene in each cluster

meanClusterExpression(seurat, genes = NULL)

Arguments

seurat

Seurat object
genes

(Optional) Character vector specifying genes for which means should be calculated. If any provided genes are not detected, they are silently dropped. Default: all detected genes, i.e. rownames(seurat@data).

Value

A gene x cluster matrix, where each column contains the mean expression of each gene over all the cells in that cluster

Examples

meanClusterExpression(pbmc, c("IL32", "CD2"))
#> Computing cluster means for pbmc...
#>             0         1         2         3
#> IL32 2.563624 0.5996828 2.6203414 0.3782335
#> CD2  1.239862 0.3811947 0.7697423 0.0000000