Retrieve cells in specified clusters

Source: R/utils.R

Given a Seurat object and the names of specific clusters (corresponding to identities in seurat@ident), return the names of cells in those clusters.

whichCells(seurat, clusters)

Arguments

seurat

Seurat object
clusters

Vector specifying clusters for which cells should be retrieved. Elements should correspond to levels in seurat@ident.

Value

Character vector of cell names

Examples

whichCells(pbmc, clusters = c(0, 1))
#>  [1] "ATGCCAGAACGACT" "CATGGCCTGTGCAT" "GAACCTGATGAACC" "TGACTGGATTCTCA"
#>  [5] "AGTCAGACTGCACA" "TCTGATACACGTGT" "TGGTATCTAAACAG" "GCAGCTCTGTTTCT"
#>  [9] "GATATAACACGCAT" "AATGTTGACAGTCA" "AGGTCATGAGTGTC" "AGAGATGATCTCGC"
#> [13] "GGGTAACTCTAGTG" "CATGAGACACGGGA" "TACGCCACTCCGAA" "CTAAACCTGTGCAT"
#> [17] "GTAAGCACTCATTC" "TTGGTACTGAATCC" "CATCATACGGAGCA" "TACATCACGCTAAC"
#> [21] "TTACCATGAATCGC" "ATAGGAGAAACAGA" "GCGCACGACTTTAC" "ACTCGCACGAAAGT"
#> [25] "ATTACCTGCCTTAT" "CCCAACTGCAATCG" "AAATTCGAATCACG" "CCATCCGATTCGCC"
#> [29] "TCCACTCTGAGCTT" "CATCAGGATGCACA" "GATAGAGAAGGGTG" "TAGGGACTGAACTC"
#> [33] "GCTCCATGAGAAGT" "TACAATGATGCTAG" "CTTCATGACCGAAT" "CTGCCAACAGGAGC"
#> [37] "TTGCATTGAGCTAC" "CGGCACGAACTCAG" "GGCCGATGTACTCT" "CGTAGCCTGTATGC"
#> [41] "TGAGCTGAATGCTG" "CCTATAACGAGACG" "ATAAGTTGGTACGT" "AAGCGACTTTGACG"
#> [45] "ACCAGTGAATACCG" "CTAGGTGATGGTTG" "GCACTAGACCTTTA" "CATGCGCTAGTCAC"
#> [49] "TTGAGGACTACGCA" "ATACCACTCTAAGC" "CATATAGACTAAGC" "TTTAGCTGTACTCT"
#> [53] "GACATTCTCCACCT" "ACGTGATGCCATGA" "ATTGTAGATTCCCG" "GATAGAGATCACGA"
#> [57] "AATGCGTGGACGGA" "GCGTAAACACGGTT"